HL_9BUP_067

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAGUUCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_067 not in the Motif Atlas

Homologous match to HL_8Z1P_002

Geometric discrepancy: 0.5171

The information below is about HL_8Z1P_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9BUP|1|S7|U|51
9BUP|1|S7|G|52
9BUP|1|S7|A|53
9BUP|1|S7|G|54
9BUP|1|S7|U|55
9BUP|1|S7|U|56
9BUP|1|S7|C|57
9BUP|1|S7|G|58
9BUP|1|S7|A|59

Current chains

Chain S7

tRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA