HL_9BUP_068

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

9BUP|1|S8|C|17, 9BUP|1|S8|G|18, 9BUP|1|S8|G|19, 9BUP|1|S8|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_068 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.1701

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9BUP|1|S8|C|13
9BUP|1|S8|A|14
9BUP|1|S8|G|15
9BUP|1|S8|C|16
9BUP|1|S8|C|17
9BUP|1|S8|G|18
9BUP|1|S8|G|19
9BUP|1|S8|U|20
9BUP|1|S8|A|21
9BUP|1|S8|G|22

Current chains

Chain S8

tRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA