HL_9BUP_070
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_070 not in the Motif Atlas
- Homologous match to HL_6JXM_003
- Geometric discrepancy: 0.1495
- The information below is about HL_6JXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9BUP|1|S8|G|53
9BUP|1|S8|U|54
9BUP|1|S8|U|55
9BUP|1|S8|C|56
9BUP|1|S8|A|57
9BUP|1|S8|A|58
9BUP|1|S8|A|59
9BUP|1|S8|U|60
9BUP|1|S8|C|61
Current chains
- Chain S8
- tRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 60S ribosomal protein L11a
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