HL_9BUP_075

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAAGC

Length

7 nucleotides

Bulged bases

9BUP|1|SA|G|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_075 not in the Motif Atlas

Homologous match to HL_8CRE_193

Geometric discrepancy: 0.2227

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9BUP|1|SA|G|152
9BUP|1|SA|A|153
9BUP|1|SA|A|154
9BUP|1|SA|A|155
9BUP|1|SA|A|156
9BUP|1|SA|G|157
9BUP|1|SA|C|158

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S1

40S ribosomal protein S24

Chain SH

40S ribosomal protein S6