HL_9BUP_080

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAGG

Length

6 nucleotides

Bulged bases

9BUP|1|SA|A|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_080 not in the Motif Atlas

Homologous match to HL_8CRE_201

Geometric discrepancy: 0.0969

The information below is about HL_8CRE_201

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

9BUP|1|SA|C|420
9BUP|1|SA|U|421
9BUP|1|SA|A|422
9BUP|1|SA|A|423
9BUP|1|SA|G|424
9BUP|1|SA|G|425

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L23

Chain SH

40S ribosomal protein S6