HL_9BUP_081

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAAGAA

Length

7 nucleotides

Bulged bases

9BUP|1|SA|A|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_081 not in the Motif Atlas

Homologous match to HL_8CRE_202

Geometric discrepancy: 0.5118

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9BUP|1|SA|U|456
9BUP|1|SA|A|457
9BUP|1|SA|A|458
9BUP|1|SA|A|459
9BUP|1|SA|G|460
9BUP|1|SA|A|461
9BUP|1|SA|A|462

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S1

40S ribosomal protein S24

Chain SF

40S ribosomal protein S4