HL_9BUP_090
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|SA|A|1297
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_090 not in the Motif Atlas
- Homologous match to HL_8CRE_216
- Geometric discrepancy: 0.0813
- The information below is about HL_8CRE_216
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|G|1289
9BUP|1|SA|A|1290
9BUP|1|SA|C|1291
9BUP|1|SA|U|1292
9BUP|1|SA|C|1293
9BUP|1|SA|A|1294
9BUP|1|SA|A|1295
9BUP|1|SA|C|1296
9BUP|1|SA|A|1297
9BUP|1|SA|C|1298
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S8
- Transfer RNA; tRNA
- Chain S9
- Transfer RNA; tRNA
- Chain SM
- 40S ribosomal protein S16
- Chain SN
- 40S ribosomal protein S20e
- Chain ST
- 40S ribosomal protein S29
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