HL_9BUP_091

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9BUP|1|SA|U|1416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_091 not in the Motif Atlas

Homologous match to HL_8CRE_219

Geometric discrepancy: 0.1643

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9BUP|1|SA|G|1411
9BUP|1|SA|U|1412
9BUP|1|SA|U|1413
9BUP|1|SA|A|1414
9BUP|1|SA|A|1415
9BUP|1|SA|U|1416
9BUP|1|SA|U|1417
9BUP|1|SA|C|1418

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SW

40S ribosomal protein S17