HL_9BUP_093

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_093 not in the Motif Atlas

Homologous match to HL_8CRE_222

Geometric discrepancy: 0.1557

The information below is about HL_8CRE_222

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9BUP|1|SA|C|1797
9BUP|1|SA|G|1798
9BUP|1|SA|A|1799
9BUP|1|SA|A|1800
9BUP|1|SA|A|1801
9BUP|1|SA|G|1802

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain SY

40S ribosomal protein S19