HL_9C3H_007

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9C3H|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_007 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.395

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9C3H|1|L5|U|204
9C3H|1|L5|C|205
9C3H|1|L5|U|206
9C3H|1|L5|G|207
9C3H|1|L5|A|208
9C3H|1|L5|U|209
9C3H|1|L5|C|210
9C3H|1|L5|G|211

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein uL24

Chain LI

Large ribosomal subunit protein eL32