9C3H Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9C3H_001 | 1/L1/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_9C3H_002 | 1/L1/107:112 | No text annotation | homologous HL_8P9A_188 HL_13184.2 | |
| HL_9C3H_003 | 1/L5/37:44 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_9C3H_004 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_9C3H_005 | 1/L5/89:95 | No text annotation | homologous HL_8P9A_115 HL_76371.2 | |
| HL_9C3H_006 | 1/L5/131:137 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_9C3H_007 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_9C3H_008 | 1/L5/222:226 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_9C3H_009 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_9C3H_010 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_9C3H_011 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_9C3H_012 | 1/L5/368:373 | GNRA | homologous HL_8P9A_122 HL_34789.2 | |
| HL_9C3H_013 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_9C3H_014 | 1/L5/1170:1191 | No text annotation | ||
| HL_9C3H_016 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8P9A_126 HL_33597.2 | |
| HL_9C3H_017 | 1/L5/1364:1373 | No text annotation | ||
| HL_9C3H_018 | 1/L5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_9C3H_019 | 1/L5/1405:1412 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_9C3H_020 | 1/L5/1436:1448 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_9C3H_021 | 1/L5/1480:1484 | No text annotation | ||
| HL_9C3H_022 | 1/L5/1561:1566 | GNRA | homologous HL_8P9A_131 HL_34789.2 | |
| HL_9C3H_023 | 1/L5/1593:1602 | No text annotation | homologous HL_8P9A_132 HL_50204.1 | |
| HL_9C3H_024 | 1/L5/1627:1635 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_9C3H_025 | 1/L5/1675:1680 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_9C3H_026 | 1/L5/1816:1823 | T-loop related | geometric HL_8P9A_120 HL_63894.2 | |
| HL_9C3H_027 | 1/L5/1864:1870 | GNRA | homologous HL_8P9A_137 HL_34789.2 | |
| HL_9C3H_028 | 1/L5/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_9C3H_029 | 1/L5/2257:2261 | Mini UNCG | geometric HL_4V9F_041 HL_90436.2 | |
| HL_9C3H_030 | 1/L5/2317:2322 | GNRA | homologous HL_8P9A_142 HL_34789.2 | |
| HL_9C3H_031 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_9C3H_032 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_9C3H_033 | 1/L5/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_9C3H_034 | 1/L5/2523:2532 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_9C3H_036 | 1/L5/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_9C3H_037 | 1/L5/2624:2632 | Pseudoknot geometry | homologous HL_8P9A_148 HL_22758.1 | |
| HL_9C3H_038 | 1/L5/2664:2670 | Other HL | geometric HL_4V9F_039 HL_67772.1 | |
| HL_9C3H_039 | 1/L5/2705:2710 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_9C3H_040 | 1/L5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_9C3H_041 | 1/L5/2792:2799 | No text annotation | homologous HL_8P9A_152 HL_28592.1 | |
| HL_9C3H_042 | 1/L5/2810:2816 | GNRA | homologous HL_8P9A_153 HL_34789.2 | |
| HL_9C3H_043 | 1/L5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_9C3H_044 | 1/L5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_9C3H_045 | 1/L5/3639:3649 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_9C3H_046 | 1/L5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_9C3H_047 | 1/L5/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.2 | |
| HL_9C3H_048 | 1/L5/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_9C3H_049 | 1/L5/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_9C3H_050 | 1/L5/3873:3882 | No text annotation | homologous HL_8P9A_162 HL_78372.1 | |
| HL_9C3H_052 | 1/L5/4193:4201 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
| HL_9C3H_053 | 1/L5/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_9C3H_054 | 1/L5/4250:4258 | No text annotation | homologous HL_8P9A_167 HL_02452.1 | |
| HL_9C3H_055 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.2 | |
| HL_9C3H_056 | 1/L5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_9C3H_057 | 1/L5/4321:4326 | GNRA | homologous HL_8P9A_170 HL_34789.2 | |
| HL_9C3H_058 | 1/L5/4352:4362 | tRNA anticodon loop | geometric HL_8H1B_001 HL_86621.1 | |
| HL_9C3H_059 | 1/L5/4417:4425 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
| HL_9C3H_060 | 1/L5/4474:4481 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_9C3H_061 | 1/L5/4497:4503 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_9C3H_062 | 1/L5/4540:4545 | GNRA | homologous HL_8P9A_175 HL_34789.2 | |
| HL_9C3H_063 | 1/L5/4603:4608 | GNRA | homologous HL_8P9A_176 HL_34789.2 | |
| HL_9C3H_064 | 1/L5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_9C3H_065 | 1/L5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_9C3H_066 | 1/L5/4907:4914 | No text annotation | geometric HL_8G9Z_001 HL_75660.7 | |
| HL_9C3H_067 | 1/L5/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_9C3H_068 | 1/L5/5021:5028 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_9C3H_069 | 1/L9/32:45 | No text annotation | geometric HL_8C3A_228 NA | |
| HL_9C3H_070 | 1/L9/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_9C3H_071 | 1/L9/86:91 | GNRA | homologous HL_8C3A_074 NA | |
| HL_9C3H_072 | 1/S2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_9C3H_073 | 1/S2/69:80 | No text annotation | ||
| HL_9C3H_074 | 1/S2/156:162 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_9C3H_076 | 1/S2/288:295 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_9C3H_078 | 1/S2/377:387 | No text annotation | ||
| HL_9C3H_079 | 1/S2/416:421 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_9C3H_080 | 1/S2/441:452 | No text annotation | homologous HL_8P9A_199 HL_86432.1 | |
| HL_9C3H_081 | 1/S2/462:467 | UNCG | homologous HL_8C3A_202 NA | |
| HL_9C3H_082 | 1/S2/498:504 | No text annotation | homologous HL_8C3A_203 NA | |
| HL_9C3H_083 | 1/S2/535:548 | No text annotation | ||
| HL_9C3H_084 | 1/S2/569:581 | No text annotation | homologous HL_8P9A_203 HL_68749.1 | |
| HL_9C3H_085 | 1/S2/618:623 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_9C3H_086 | 1/S2/820:828 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_9C3H_087 | 1/S2/834:838 | No text annotation | geometric HL_8VTW_051 NA | |
| HL_9C3H_089 | 1/S2/957:966 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_9C3H_090 | 1/S2/994:999 | GNRA | homologous HL_8P9A_210 HL_34789.2 | |
| HL_9C3H_091 | 1/S2/1054:1064 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_9C3H_092 | 1/S2/1114:1119 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_9C3H_093 | 1/S2/1141:1146 | GNRA | homologous HL_8C3A_215 NA | |
| HL_9C3H_094 | 1/S2/1178:1183 | GNRA | homologous HL_8C3A_216 NA | |
| HL_9C3H_095 | 1/S2/1245:1254 | No text annotation | homologous HL_8P9A_215 HL_97521.1 | |
| HL_9C3H_096 | 1/S2/1295:1304 | Anticodon loop related | homologous HL_8C3A_218 NA | |
| HL_9C3H_097 | 1/S2/1353:1358 | GNRA | homologous HL_8C3A_219 NA | |
| HL_9C3H_098 | 1/S2/1366:1373 | T-loop related | homologous HL_8P9A_218 HL_63894.2 | |
| HL_9C3H_099 | 1/S2/1416:1424 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_9C3H_100 | 1/S2/1460:1466 | No text annotation | homologous HL_8C3A_222 NA | |
| HL_9C3H_101 | 1/S2/1565:1570 | GNRA | homologous HL_8C3A_223 NA | |
| HL_9C3H_102 | 1/S2/1614:1625 | No text annotation | homologous HL_8P9A_222 HL_50951.1 | |
| HL_9C3H_103 | 1/S2/1658:1666 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_9C3H_104 | 1/S2/1847:1852 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_9C3H_105 | 1/S4/13:22 | No text annotation | homologous HL_4YYE_001 NA | |
| HL_9C3H_106 | 1/S4/31:39 | tRNA anticodon loop | homologous HL_4WZD_238 NA | |
| HL_9C3H_107 | 1/S4/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9C3H_015 | No text annotation | ||
| HL_9C3H_035 | GNRA | ||
| HL_9C3H_051 | No text annotation | ||
| HL_9C3H_075 | No text annotation | ||
| HL_9C3H_108 | No text annotation | ||
| HL_9C3H_077 | No text annotation | ||
| HL_9C3H_088 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9C3H_001 | 1/L1/13:19, 1/L5/415:421 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_9C3H_002 | 1/L1/25:26, 1/L5/348:350 | Single bulged A | geometric IL_8C3A_014 NA | |
| IL_9C3H_003 | 1/L1/32:33, 1/L5/339:342 | No text annotation | geometric IL_8VTW_072 NA | |
| IL_9C3H_004 | 1/L1/64:66, 1/L1/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_9C3H_005 | 1/L1/139:141, 1/L5/16:18 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 IL_01003.2 | |
| IL_9C3H_006 | 1/L1/143:144, 1/L5/12:14 | Single bulged U | geometric IL_8C3A_003 NA | |
| IL_9C3H_007 | 1/L1/149:151, 1/L5/6:7 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9C3H_008 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_9C3H_009 | 1/L5/30:37, 1/L5/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_9C3H_010 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_1JBR_001 IL_62167.2 | |
| IL_9C3H_011 | 1/L5/118:121, 1/L5/152:153 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_9C3H_012 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_9C3H_013 | 1/L5/121:122, 1/L5/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_9C3H_014 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9C3H_015 | 1/L5/169:173, 1/L5/263:266 | No text annotation | ||
| IL_9C3H_016 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9C3H_017 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_9C3H_018 | 1/L5/387:390, 1/L5/401:414 | No text annotation | homologous IL_8P9A_243 IL_44923.1 | |
| IL_9C3H_019 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_49140.1 | |
| IL_9C3H_020 | 1/L5/448:450, 1/L5/1297:1298 | No text annotation | ||
| IL_9C3H_021 | 1/L5/459:460, 1/L5/695:697 | Single bulged C | geometric IL_8C3A_075 NA | |
| IL_9C3H_022 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
| IL_9C3H_023 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_9C3H_024 | 1/L5/482:485, 1/L5/671:672 | Multiple bulged bases | geometric IL_7OS0_002 IL_71421.2 | |
| IL_9C3H_025 | 1/L5/487:489, 1/L5/664:669 | No text annotation | ||
| IL_9C3H_026 | 1/L5/491:493, 1/L5/661:662 | Single bulged U | geometric IL_8VTW_037 NA | |
| IL_9C3H_028 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.2 | |
| IL_9C3H_029 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_9C3H_030 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases | geometric IL_7Q80_003 IL_05670.1 | |
| IL_9C3H_031 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_9C3H_032 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_9C3H_033 | 1/L5/737:740, 1/L5/925:926 | No text annotation | ||
| IL_9C3H_034 | 1/L5/740:742, 1/L5/922:925 | No text annotation | ||
| IL_9C3H_262 | 1/L5/745:752, 1/L5/911:919 | No text annotation | geometric IL_8P9A_248 IL_25001.1 | |
| IL_9C3H_036 | 1/L5/754:757, 1/L5/907:909 | No text annotation | geometric IL_4V87_185 NA | |
| IL_9C3H_038 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_9C3H_039 | 1/L5/1082:1084, 1/L5/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.5 | |
| IL_9C3H_040 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_9C3H_041 | 1/L5/1093:1097, 1/L5/1198:1203 | No text annotation | ||
| IL_9C3H_042 | 1/L5/1244:1245, 1/L5/1265:1267 | Single bulged G | geometric IL_8C3A_048 NA | |
| IL_9C3H_043 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9C3H_044 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_9C3H_045 | 1/L5/1360:1361, 1/L5/1376:1379 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_9C3H_046 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | geometric IL_1M5K_001 IL_47352.2 | |
| IL_9C3H_047 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | geometric IL_8C3A_404 NA | |
| IL_9C3H_048 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8P9A_252 IL_14190.2 | |
| IL_9C3H_049 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_9C3H_050 | 1/L5/1479:1480, 1/L5/1484:1486 | No text annotation | ||
| IL_9C3H_051 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.2 | |
| IL_9C3H_052 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_9C3H_053 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_9C3H_054 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_9C3H_055 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_9C3H_056 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_9C3H_057 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_9C3H_058 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_9C3H_059 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.2 | |
| IL_9C3H_060 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_9C3H_061 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_9C3H_062 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
| IL_9C3H_063 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_8P9A_267 IL_34520.2 | |
| IL_9C3H_064 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_9C3H_065 | 1/L5/1746:1749, 1/L5/1781:1784 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_9C3H_066 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.2 | |
| IL_9C3H_067 | 1/L5/1754:1756, 1/L5/1775:1776 | No text annotation | ||
| IL_9C3H_068 | 1/L5/1756:1759, 1/L5/1773:1775 | Isolated cWH basepair | geometric IL_8AF0_002 IL_10892.2 | |
| IL_9C3H_069 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged A | homologous IL_8P9A_273 IL_14190.2 | |
| IL_9C3H_070 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.2 | |
| IL_9C3H_072 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8P9A_276 IL_08938.1 | |
| IL_9C3H_073 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_9C3H_074 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | geometric IL_7D7V_002 IL_28408.2 | |
| IL_9C3H_075 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_9C3H_076 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_9C3H_077 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
| IL_9C3H_078 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8P9A_281 IL_97561.2 | |
| IL_9C3H_079 | 1/L5/1957:1965, 1/L5/2022:2026 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_9C3H_080 | 1/L5/2083:2085, 1/L5/2272:2273 | No text annotation | ||
| IL_9C3H_081 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | homologous IL_8P9A_285 IL_42997.5 | |
| IL_9C3H_082 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_9C3H_083 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8P9A_287 IL_90775.2 | |
| IL_9C3H_084 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | homologous IL_8P9A_288 IL_14190.2 | |
| IL_9C3H_085 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_9C3H_086 | 1/L5/2406:2409, 1/L5/2783:2784 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.2 | |
| IL_9C3H_087 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop | homologous IL_8C3A_482 NA | |
| IL_9C3H_088 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_9C3H_263 | 1/L5/2477:2479, 1/L5/2499:2500 | No text annotation | ||
| IL_9C3H_090 | 1/L5/2549:2550, 1/L5/2768:2770 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_9C3H_091 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.2 | |
| IL_9C3H_092 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C | homologous IL_8P9A_297 IL_05642.2 | |
| IL_9C3H_093 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_9C3H_094 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9C3H_095 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_28408.2 | |
| IL_9C3H_096 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_9C3H_097 | 1/L5/2704:2705, 1/L5/2710:2712 | No text annotation | ||
| IL_9C3H_098 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_9C3H_099 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8P9A_303 IL_10432.1 | |
| IL_9C3H_100 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_9C3H_101 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_9C3H_102 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_8P9A_306 IL_28217.1 | |
| IL_9C3H_103 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_9C3H_104 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_9C3H_105 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_9C3H_106 | 1/L5/2901:2905, 1/L5/3589:3598 | No text annotation | ||
| IL_9C3H_108 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8P9A_310 IL_14190.2 | |
| IL_9C3H_109 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_9C3H_110 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_9C3H_111 | 1/L5/3704:3705, 1/L5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_9C3H_112 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_9C3H_113 | 1/L5/3710:3714, 1/L5/3739:3741 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_9C3H_114 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_9C3H_115 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_9C3H_116 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_9C3H_117 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_9C3H_118 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_8P9A_320 IL_80025.1 | |
| IL_9C3H_119 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_8P9A_321 IL_97561.2 | |
| IL_9C3H_120 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_9C3H_121 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_9C3H_122 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_9C3H_123 | 1/L5/4095:4097, 1/L5/4112:4113 | Single bulged C | geometric IL_1DQH_001 NA | |
| IL_9C3H_124 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_9C3H_125 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_9C3H_126 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_14190.2 | |
| IL_9C3H_127 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
| IL_9C3H_128 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_9C3H_129 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_9C3H_130 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.2 | |
| IL_9C3H_131 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_9C3H_132 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation | homologous IL_8P9A_332 IL_36931.2 | |
| IL_9C3H_133 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_9C3H_134 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_9C3H_135 | 1/L5/4456:4458, 1/L5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_335 IL_68118.2 | |
| IL_9C3H_136 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_9C3H_137 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_9C3H_138 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_9C3H_139 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_9C3H_140 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_01003.2 | |
| IL_9C3H_141 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | geometric IL_5TBW_060 NA | |
| IL_9C3H_142 | 1/L5/4580:4582, 1/L5/4721:4723 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10892.2 | |
| IL_9C3H_143 | 1/L5/4582:4585, 1/L5/4717:4721 | Double sheared; A in syn | geometric IL_8T29_001 IL_58355.2 | |
| IL_9C3H_144 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.2 | |
| IL_9C3H_145 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_9C3H_146 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_9C3H_147 | 1/L5/4632:4637, 1/L5/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_9C3H_148 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.2 | |
| IL_9C3H_149 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_9C3H_150 | 1/L5/4680:4685, 1/L5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_9C3H_151 | 1/L5/4740:4742, 1/L5/4958:4959 | No text annotation | ||
| IL_9C3H_152 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_8C3A_444 NA | |
| IL_9C3H_153 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | ||
| IL_9C3H_154 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_9C3H_155 | 1/L5/4769:4771, 1/L5/4863:4865 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 NA | |
| IL_9C3H_156 | 1/L5/4885:4889, 1/L5/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_71154.2 | |
| IL_9C3H_157 | 1/L5/4891:4896, 1/L5/4924:4928 | No text annotation | ||
| IL_9C3H_159 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_9C3H_160 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.2 | |
| IL_9C3H_161 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
| IL_9C3H_162 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | homologous IL_8P9A_359 IL_00086.1 | |
| IL_9C3H_163 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_9C3H_164 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_9C3H_165 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared; A in syn | homologous IL_8P9A_362 IL_58355.2 | |
| IL_9C3H_166 | 1/L9/15:16, 1/L9/62:64 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_9C3H_167 | 1/L9/21:27, 1/L9/52:57 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_9C3H_168 | 1/L9/28:29, 1/L9/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_9C3H_169 | 1/L9/32:36, 1/L9/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9C3H_170 | 1/L9/71:78, 1/L9/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
| IL_9C3H_171 | 1/L9/79:81, 1/L9/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.2 | |
| IL_9C3H_172 | 1/L9/82:85, 1/L9/92:94 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_9C3H_173 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_8C3A_427 NA | |
| IL_9C3H_174 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_9C3H_175 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_9C3H_176 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_9C3H_177 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_9C3H_178 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_8P9A_378 IL_61299.6 | |
| IL_9C3H_179 | 1/S2/63:69, 1/S2/80:85 | No text annotation | geometric IL_2NPY_001 IL_47352.2 | |
| IL_9C3H_180 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_2O3V_001 IL_71625.2 | |
| IL_9C3H_181 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.2 | |
| IL_9C3H_182 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_9C3H_183 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_9C3H_184 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_9C3H_185 | 1/S2/152:154, 1/S2/164:166 | No text annotation | homologous IL_8P9A_384 IL_87720.1 | |
| IL_9C3H_186 | 1/S2/188:192, 1/S2/207:211 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.2 | |
| IL_9C3H_187 | 1/S2/216:219, 1/S2/302:309 | No text annotation | ||
| IL_9C3H_188 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_8P9A_388 IL_14190.2 | |
| IL_9C3H_189 | 1/S2/317:319, 1/S2/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_9C3H_190 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_9C3H_191 | 1/S2/366:371, 1/S2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_9C3H_192 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_8P9A_393 IL_93336.1 | |
| IL_9C3H_193 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_8P9A_394 IL_10892.2 | |
| IL_9C3H_194 | 1/S2/459:461, 1/S2/468:470 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_9C3H_195 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_8P9A_396 IL_97561.2 | |
| IL_9C3H_196 | 1/S2/491:495, 1/S2/508:509 | C-loop | homologous IL_8C3A_416 NA | |
| IL_9C3H_197 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.2 | |
| IL_9C3H_198 | 1/S2/530:534, 1/S2/549:555 | Partly complementary | geometric IL_7VYX_008 IL_71154.2 | |
| IL_9C3H_199 | 1/S2/563:565, 1/S2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_9C3H_200 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
| IL_9C3H_201 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot | homologous IL_8P9A_402 IL_11411.1 | |
| IL_9C3H_202 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_9C3H_203 | 1/S2/611:617, 1/S2/624:632 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_9C3H_204 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_9C3H_205 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_9C3H_206 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8P9A_406 IL_01003.2 | |
| IL_9C3H_207 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_9C3H_208 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_9C3H_209 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_71625.2 | |
| IL_9C3H_210 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_9C3H_211 | 1/S2/833:834, 1/S2/838:841 | Multiple bulged bases | geometric IL_4V9F_088 IL_44609.2 | |
| IL_9C3H_212 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_4P3T_005 NA | |
| IL_9C3H_213 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_01003.2 | |
| IL_9C3H_214 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_9C3H_215 | 1/S2/925:927, 1/S2/1014:1017 | Isolated non-canonical cWW pair | homologous IL_8P9A_418 IL_01003.2 | |
| IL_9C3H_216 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.2 | |
| IL_9C3H_217 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_9C3H_218 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.2 | |
| IL_9C3H_219 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_9C3H_220 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | homologous IL_8P9A_423 IL_31359.1 | |
| IL_9C3H_221 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_9C3H_222 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_9C3H_223 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_9C3H_224 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated cWH basepair | geometric IL_406D_004 NA | |
| IL_9C3H_225 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_9C3H_226 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8C3A_446 NA | |
| IL_9C3H_227 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_9C3H_228 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_9C3H_229 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_8C3A_449 NA | |
| IL_9C3H_230 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_9C3H_231 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_8P9A_433 IL_34520.2 | |
| IL_9C3H_232 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_9C3H_233 | 1/S2/1281:1290, 1/S2/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_9C3H_234 | 1/S2/1291:1293, 1/S2/1306:1308 | Other IL | homologous IL_8C3A_454 NA | |
| IL_9C3H_235 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_9C3H_236 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | geometric IL_8C3A_456 NA | |
| IL_9C3H_237 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | geometric IL_4V88_510 NA | |
| IL_9C3H_238 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_34117.1 | |
| IL_9C3H_239 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_9C3H_240 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.2 | |
| IL_9C3H_241 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_8P9A_443 IL_34520.2 | |
| IL_9C3H_242 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_8P9A_419 IL_15225.2 | |
| IL_9C3H_243 | 1/S2/1402:1405, 1/S2/1441:1444 | No text annotation | homologous IL_8C3A_462 NA | |
| IL_9C3H_244 | 1/S2/1408:1409, 1/S2/1432:1438 | No text annotation | ||
| IL_9C3H_245 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_9C3H_246 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_01003.2 | |
| IL_9C3H_247 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_9C3H_248 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_9C3H_249 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_9C3H_250 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_9C3H_251 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_9C3H_252 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8P9A_453 IL_25873.2 | |
| IL_9C3H_253 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_9C3H_254 | 1/S2/1708:1711, 1/S2/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_9C3H_255 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_9C3H_256 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_8P9A_457 IL_58355.2 | |
| IL_9C3H_257 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | homologous IL_8P9A_458 IL_97561.2 | |
| IL_9C3H_258 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_9C3H_259 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_9C3H_260 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.2 | |
| IL_9C3H_261 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_8C3A_480 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9C3H_027 | Isolated non-canonical cWW pair | ||
| IL_9C3H_035 | No text annotation | ||
| IL_9C3H_037 | Single stack bend | ||
| IL_9C3H_071 | No text annotation | ||
| IL_9C3H_089 | No text annotation | ||
| IL_9C3H_107 | No text annotation | ||
| IL_9C3H_158 | Single bulged C |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9C3H_001 | 1/L1/19:20, 1/L5/380:387, 1/L5/414:415 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_9C3H_002 | 1/L1/19:20, 1/L5/380:390, 1/L5/401:415 | No text annotation | geometric J3_5TBW_062 NA | |
| J3_9C3H_003 | 1/L1/21:24, 1/L5/351:367, 1/L5/374:379 | No text annotation | geometric J3_5TBW_061 NA | |
| J3_9C3H_004 | 1/L1/44:45, 1/L1/58:64, 1/L1/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_9C3H_005 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_9C3H_006 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
| J3_9C3H_007 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_9C3H_008 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_9C3H_009 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_9C3H_010 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_9C3H_011 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_9C3H_012 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_9C3H_013 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_9C3H_014 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_9C3H_015 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | ||
| J3_9C3H_016 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_9C3H_017 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_9C3H_018 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_9C3H_019 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_9C3H_020 | 1/L5/4091:4094, 1/L5/4114:4129, 1/L5/4155:4158 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_9C3H_021 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_9C3H_022 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_9C3H_023 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_8P9A_063 J3_44047.1 | |
| J3_9C3H_024 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_9C3H_025 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_9C3H_026 | 1/L9/9:14, 1/L9/65:66, 1/L9/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_9C3H_027 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_9C3H_028 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_9C3H_029 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_9C3H_030 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_9C3H_031 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_9C3H_032 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_9C3H_033 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_9C3H_034 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_9C3H_035 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_8P9A_077 J3_44359.1 | |
| J3_9C3H_036 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_9C3H_037 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_9C3H_038 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_9C3H_039 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_9C3H_040 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_9C3H_041 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_9C3H_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_9C3H_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_9C3H_003 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_9C3H_004 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_9C3H_005 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | ||
| J4_9C3H_006 | 1/L5/2409:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2783 | No text annotation | ||
| J4_9C3H_007 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_9C3H_008 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_9C3H_009 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_9C3H_010 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_9C3H_011 | 1/L5/4231:4235, 1/L5/4289:4293, 1/L5/4317:4319, 1/L5/4328:4330 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_9C3H_012 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_9C3H_013 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_9C3H_014 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_9C3H_015 | 1/S4/7:10, 1/S4/25:27, 1/S4/43:49, 1/S4/65:66 | tRNA junction | homologous J4_5E81_027 NA | |
| J5_9C3H_001 | 1/L1/35:42, 1/L1/101:106, 1/L1/113:114, 1/L1/136:138, 1/L5/19:21 | No text annotation | ||
| J5_9C3H_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_9C3H_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_9C3H_004 | 1/L5/3903:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4557 | No text annotation | ||
| J5_9C3H_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_9C3H_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_9C3H_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_9C3H_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_9C3H_009 | 1/S2/123:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:341 | No text annotation | ||
| J6_9C3H_001 | 1/L1/33:35, 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339 | No text annotation | ||
| J6_9C3H_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_9C3H_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_9C3H_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
No problematic loops
Coloring options: