HL_9C3H_014

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

9C3H|1|L5|G|1178, 9C3H|1|L5|U|1179, 9C3H|1|L5|C|1181, 9C3H|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C3H|1|L5|G|1170
9C3H|1|L5|G|1171
9C3H|1|L5|C|1172
9C3H|1|L5|G|1173
9C3H|1|L5|G|1174
9C3H|1|L5|A|1175
9C3H|1|L5|C|1176
9C3H|1|L5|U|1177
9C3H|1|L5|G|1178
9C3H|1|L5|U|1179
9C3H|1|L5|C|1180
9C3H|1|L5|C|1181
9C3H|1|L5|C|1182
9C3H|1|L5|C|1183
9C3H|1|L5|A|1184
9C3H|1|L5|G|1185
9C3H|1|L5|U|1186
9C3H|1|L5|G|1187
9C3H|1|L5|C|1188
9C3H|1|L5|G|1189
9C3H|1|L5|C|1190
9C3H|1|L5|C|1191

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

Large ribosomal subunit protein uL18

Chain L9

5S ribosomal RNA; 5S rRNA

Chain Lz

Large ribosomal subunit protein uL16