HL_9C3H_033

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_033 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1894

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9C3H|1|L5|C|2458
9C3H|1|L5|G|2459
9C3H|1|L5|A|2460
9C3H|1|L5|G|2461
9C3H|1|L5|C|2462
9C3H|1|L5|G|2463

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein eL15

Chain LP

Large ribosomal subunit protein eL37