HL_9C3H_039

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

9C3H|1|L5|U|2707, 9C3H|1|L5|C|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_039 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1636

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9C3H|1|L5|G|2705
9C3H|1|L5|G|2706
9C3H|1|L5|U|2707
9C3H|1|L5|U|2708
9C3H|1|L5|C|2709
9C3H|1|L5|C|2710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Ln

Large ribosomal subunit protein uL23