HL_9C3H_040

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

9C3H|1|L5|C|2739, 9C3H|1|L5|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_040 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.113

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9C3H|1|L5|C|2738
9C3H|1|L5|C|2739
9C3H|1|L5|U|2740
9C3H|1|L5|U|2741
9C3H|1|L5|G|2742

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain Lp

Large ribosomal subunit protein eL43