HL_9C3H_050

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9C3H|1|L5|A|3876, 9C3H|1|L5|A|3877, 9C3H|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_050 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0522

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9C3H|1|L5|G|3873
9C3H|1|L5|G|3874
9C3H|1|L5|G|3875
9C3H|1|L5|A|3876
9C3H|1|L5|A|3877
9C3H|1|L5|C|3878
9C3H|1|L5|G|3879
9C3H|1|L5|G|3880
9C3H|1|L5|G|3881
9C3H|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

Large ribosomal subunit protein eL32

Chain LY

Large ribosomal subunit protein uL13