HL_9C3H_059

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_059 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1284

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9C3H|1|L5|C|4417
9C3H|1|L5|G|4418
9C3H|1|L5|U|4419
9C3H|1|L5|PSU|4420
9C3H|1|L5|C|4421
9C3H|1|L5|A|4422
9C3H|1|L5|PSU|4423
9C3H|1|L5|A|4424
9C3H|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lo

Large ribosomal subunit protein eL40

Chain Lz

Large ribosomal subunit protein uL16