HL_9C3H_061

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_061 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.1255

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9C3H|1|L5|U|4497
9C3H|1|L5|OMU|4498
9C3H|1|L5|OMG|4499
9C3H|1|L5|PSU|4500
9C3H|1|L5|U|4501
9C3H|1|L5|C|4502
9C3H|1|L5|A|4503

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3