HL_9C3H_063

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_063 not in the Motif Atlas

Homologous match to HL_8P9A_176

Geometric discrepancy: 0.074

The information below is about HL_8P9A_176

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9C3H|1|L5|C|4603
9C3H|1|L5|G|4604
9C3H|1|L5|A|4605
9C3H|1|L5|G|4606
9C3H|1|L5|A|4607
9C3H|1|L5|G|4608

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain Lo

Large ribosomal subunit protein eL40