HL_9C3H_065

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9C3H|1|L5|G|4694, 9C3H|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_065 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0655

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9C3H|1|L5|C|4688
9C3H|1|L5|PSU|4689
9C3H|1|L5|G|4690
9C3H|1|L5|A|4691
9C3H|1|L5|A|4692
9C3H|1|L5|C|4693
9C3H|1|L5|G|4694
9C3H|1|L5|C|4695
9C3H|1|L5|C|4696
9C3H|1|L5|U|4697
9C3H|1|L5|C|4698
9C3H|1|L5|U|4699
9C3H|1|L5|A|4700
9C3H|1|L5|A|4701
9C3H|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LY

Large ribosomal subunit protein uL13

Chain Lo

Large ribosomal subunit protein eL40