HL_9C3H_066

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

9C3H|1|L5|A|4910, 9C3H|1|L5|A|4911, 9C3H|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_066 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.117

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9C3H|1|L5|G|4907
9C3H|1|L5|G|4908
9C3H|1|L5|A|4909
9C3H|1|L5|A|4910
9C3H|1|L5|A|4911
9C3H|1|L5|G|4912
9C3H|1|L5|G|4913
9C3H|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein uL13