HL_9C3H_067

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9C3H|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_067 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0869

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

9C3H|1|L5|G|4975
9C3H|1|L5|U|4976
9C3H|1|L5|A|4977
9C3H|1|L5|G|4978
9C3H|1|L5|A|4979
9C3H|1|L5|C|4980
9C3H|1|L5|G|4981
9C3H|1|L5|A|4982
9C3H|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Lh

Large ribosomal subunit protein uL22