HL_9C3H_074

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9C3H|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_074 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1202

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9C3H|1|S2|G|156
9C3H|1|S2|U|157
9C3H|1|S2|A|158
9C3H|1|S2|A2M|159
9C3H|1|S2|U|160
9C3H|1|S2|U|161
9C3H|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS6

Chain SY

Isoform 3 of Small ribosomal subunit protein eS24