HL_9C3H_099

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9C3H|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C3H_099 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.4752

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9C3H|1|S2|C|1416
9C3H|1|S2|C|1417
9C3H|1|S2|C|1418
9C3H|1|S2|C|1419
9C3H|1|S2|G|1420
9C3H|1|S2|A|1421
9C3H|1|S2|G|1422
9C3H|1|S2|C|1423
9C3H|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

Small ribosomal subunit protein eS19