HL_9C3H_105
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- UAA(H2U)G(OMG)A(H2U)AA
- Length
- 10 nucleotides
- Bulged bases
- 9C3H|1|S4|H2U|16, 9C3H|1|S4|G|17, 9C3H|1|S4|OMG|18, 9C3H|1|S4|A|19, 9C3H|1|S4|H2U|20
- QA status
- Modified nucleotides: H2U, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C3H_105 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.2498
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9C3H|1|S4|U|13
9C3H|1|S4|A|14
9C3H|1|S4|A|15
9C3H|1|S4|H2U|16
9C3H|1|S4|G|17
9C3H|1|S4|OMG|18
9C3H|1|S4|A|19
9C3H|1|S4|H2U|20
9C3H|1|S4|A|21
9C3H|1|S4|A|22
Current chains
- Chain S4
- tRNA-ARG,CCG-1
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large ribosomal subunit protein uL5
- Chain Le
- Large ribosomal subunit protein eL42
- Chain SB
- CCR4-NOT transcription complex subunit 3
Coloring options: