HL_9C3H_107
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- G(5MU)(PSU)CG(1MA)GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU, 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C3H_107 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.1172
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
9C3H|1|S4|G|53
9C3H|1|S4|5MU|54
9C3H|1|S4|PSU|55
9C3H|1|S4|C|56
9C3H|1|S4|G|57
9C3H|1|S4|1MA|58
9C3H|1|S4|G|59
9C3H|1|S4|U|60
9C3H|1|S4|C|61
Current chains
- Chain S4
- tRNA-ARG,CCG-1
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large ribosomal subunit protein uL5
- Chain Le
- Large ribosomal subunit protein eL42
- Chain SB
- CCR4-NOT transcription complex subunit 3
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