HL_9C6J_006

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C6J_006 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1037

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

9C6J|1|A|G|274
9C6J|1|A|G|275
9C6J|1|A|A|276
9C6J|1|A|A|277
9C6J|1|A|A|278
9C6J|1|A|C|279

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains