9C6J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9C6J_001 | 1/A/30:38 | T-loop with 2 stacked bulged bases | geometric HL_3IGI_001 HL_33597.3 | |
| HL_9C6J_002 | 1/A/47:61 | Pseudoknot geometry with G-bulge | geometric HL_3IGI_002 HL_94488.1 | |
| HL_9C6J_003 | 1/A/89:94 | GNRA | geometric HL_8C3A_065 NA | |
| HL_9C6J_004 | 1/A/135:141 | No text annotation | geometric HL_3IGI_004 HL_37569.3 | |
| HL_9C6J_005 | 1/A/178:187 | Pseudoknot geometry | geometric HL_3IGI_005 HL_52651.2 | |
| HL_9C6J_006 | 1/A/274:279 | No text annotation | geometric HL_8G9Z_001 HL_75660.7 | |
| HL_9C6J_008 | 1/A/368:373 | Other HL | geometric HL_3IGI_009 HL_64036.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9C6J_007 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9C6J_001 | 1/A/10:14, 1/A/257:262 | No text annotation | geometric IL_3IGI_001 IL_99498.1 | |
| IL_9C6J_002 | 1/A/70:74, 1/A/113:117 | Triple sheared | geometric IL_3IGI_002 IL_15190.2 | |
| IL_9C6J_003 | 1/A/76:79, 1/A/103:111 | No text annotation | geometric IL_3IGI_003 IL_89312.1 | |
| IL_9C6J_004 | 1/A/82:84, 1/A/99:100 | Single bulged G | geometric IL_8TSV_002 IL_28408.2 | |
| IL_9C6J_005 | 1/A/128:129, 1/A/234:238 | Multiple bulged bases | geometric IL_3IGI_005 IL_26685.1 | |
| IL_9C6J_006 | 1/A/149:156, 1/A/221:225 | Kink-turn | geometric IL_3IGI_006 IL_77045.1 | |
| IL_9C6J_007 | 1/A/158:161, 1/A/216:219 | No text annotation | geometric IL_8BH9_001 IL_65740.1 | |
| IL_9C6J_008 | 1/A/168:169, 1/A/197:209 | Pseudoknot | geometric IL_3IGI_008 IL_53787.1 | |
| IL_9C6J_009 | 1/A/172:175, 1/A/190:194 | UAA/GAN related | geometric IL_3IGI_009 IL_77691.7 | |
| IL_9C6J_010 | 1/A/267:271, 1/A/282:286 | No text annotation | geometric IL_3IGI_010 IL_96788.1 | |
| IL_9C6J_011 | 1/A/296:298, 1/A/320:321 | No text annotation | ||
| IL_9C6J_012 | 1/A/298:303, 1/A/316:320 | No text annotation | ||
| IL_9C6J_013 | 1/A/332:335, 1/A/346:350 | Receptor of 11-nt loop-receptor motif | geometric IL_5Y7M_005 IL_87739.1 | |
| IL_9C6J_014 | 1/A/365:366, 1/A/375:378 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9C6J_001 | 1/A/133:135, 1/A/141:145, 1/A/229:230 | No text annotation | geometric J3_3IGI_001 J3_14360.1 | |
| J5_9C6J_001 | 1/A/24:28, 1/A/40:43, 1/A/65:68, 1/A/119:123, 1/A/243:247 | No text annotation |
Problematic loops
No problematic loops
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