HL_9C8K_007

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

9C8K|1|1|C|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_007 not in the Motif Atlas

Homologous match to HL_8P9A_198

Geometric discrepancy: 0.3285

The information below is about HL_8P9A_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9C8K|1|1|U|416
9C8K|1|1|C|417
9C8K|1|1|A|418
9C8K|1|1|G|419
9C8K|1|1|G|420
9C8K|1|1|G|421

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein uS5

Chain J

uS4

Chain L

uS17

Chain W

uS8

Chain X

uS12