HL_9C8K_009

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9C8K|1|1|A|464, 9C8K|1|1|G|466

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_009 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.3873

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

9C8K|1|1|C|462
9C8K|1|1|C|463
9C8K|1|1|A|464
9C8K|1|1|A|465
9C8K|1|1|G|466
9C8K|1|1|G|467

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain G

eS6