HL_9C8K_012
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C8K_012 not in the Motif Atlas
- Homologous match to HL_8P9A_203
- Geometric discrepancy: 0.2088
- The information below is about HL_8P9A_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9C8K|1|1|A|569
9C8K|1|1|C|570
9C8K|1|1|U|571
9C8K|1|1|U|572
9C8K|1|1|U|573
9C8K|1|1|A|574
9C8K|1|1|A|575
9C8K|1|1|A|576
9C8K|1|1|U|577
9C8K|1|1|C|578
9C8K|1|1|C|579
9C8K|1|1|U|580
9C8K|1|1|U|581
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain J
- uS4
- Chain Y
- Small ribosomal subunit protein eS24
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