HL_9C8K_015

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

9C8K|1|1|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_015 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.4912

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9C8K|1|1|U|885
9C8K|1|1|A|886
9C8K|1|1|U|887
9C8K|1|1|U|888
9C8K|1|1|U|889
9C8K|1|1|U|890
9C8K|1|1|G|891
9C8K|1|1|U|892
9C8K|1|1|U|893
9C8K|1|1|G|894
9C8K|1|1|G|895
9C8K|1|1|U|896
9C8K|1|1|U|897
9C8K|1|1|U|898
9C8K|1|1|U|899
9C8K|1|1|C|900
9C8K|1|1|G|901

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain G

eS6

Chain L

uS17