HL_9C8K_020

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_020 not in the Motif Atlas

Homologous match to HL_8C3A_215

Geometric discrepancy: 0.1806

The information below is about HL_8C3A_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9C8K|1|1|G|1141
9C8K|1|1|G|1142
9C8K|1|1|A|1143
9C8K|1|1|A|1144
9C8K|1|1|A|1145
9C8K|1|1|C|1146

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein uS5

Chain W

uS8

Chain a

40S ribosomal protein S26