HL_9C8K_027
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9C8K|1|1|U|1621, 9C8K|1|1|U|1622, 9C8K|1|1|A|1623
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C8K_027 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.3195
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9C8K|1|1|A|1614
9C8K|1|1|U|1615
9C8K|1|1|U|1616
9C8K|1|1|G|1617
9C8K|1|1|C|1618
9C8K|1|1|A|1619
9C8K|1|1|A|1620
9C8K|1|1|U|1621
9C8K|1|1|U|1622
9C8K|1|1|A|1623
9C8K|1|1|U|1624
9C8K|1|1|U|1625
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein uS19
- Chain S
- uS13
- Chain T
- 40S ribosomal protein eS19
- Chain d
- uS14
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