HL_9CFN_002

3D structure

PDB id

9CFN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an exoribonuclease-resistant RNA from a Tombusvirus-like associated RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAGCCCUACAGGUUGGAAG

Length

20 nucleotides

Bulged bases

9CFN|1|A|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CFN_002 not in the Motif Atlas

Geometric match to HL_9CFN_003

Geometric discrepancy: 0.0595

The information below is about HL_9CFN_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42986.1

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

1

Unit IDs

9CFN|1|A|C|11
9CFN|1|A|A|12
9CFN|1|A|A|13
9CFN|1|A|G|14
9CFN|1|A|C|15
9CFN|1|A|C|16
9CFN|1|A|C|17
9CFN|1|A|U|18
9CFN|1|A|A|19
9CFN|1|A|C|20
9CFN|1|A|A|21
9CFN|1|A|G|22
9CFN|1|A|G|23
9CFN|1|A|U|24
9CFN|1|A|U|25
9CFN|1|A|G|26
9CFN|1|A|G|27
9CFN|1|A|A|28
9CFN|1|A|A|29
9CFN|1|A|G|30

Current chains

Chain A

RNA (59-MER)

Nearby chains