HL_9CG5_049

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9CG5|1|a|U|545, 9CG5|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG5_049 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3109

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9CG5|1|a|C|544
9CG5|1|a|U|545
9CG5|1|a|U|546
9CG5|1|a|A|547
9CG5|1|a|G|548
9CG5|1|a|G|549

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L21