HL_9CG6_058

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_058 not in the Motif Atlas

Geometric match to HL_8B0X_056

Geometric discrepancy: 0.2186

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9CG6|1|a|C|885
9CG6|1|a|A|886
9CG6|1|a|U|887
9CG6|1|a|C|888
9CG6|1|a|C|889
9CG6|1|a|C|890
9CG6|1|a|G|891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13