HL_9CG6_083

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9CG6|1|a|A|2268, 9CG6|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_083 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0646

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9CG6|1|a|C|2264
9CG6|1|a|U|2265
9CG6|1|a|A|2266
9CG6|1|a|A|2267
9CG6|1|a|A|2268
9CG6|1|a|G|2269
9CG6|1|a|A|2270
9CG6|1|a|G|2271
9CG6|1|a|U|2272
9CG6|1|a|A|2273
9CG6|1|a|A|2274
9CG6|1|a|C|2275
9CG6|1|a|G|2276

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27