HL_9CG6_095

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9CG6|1|a|G|2751, 9CG6|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_095 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.049

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9CG6|1|a|C|2745
9CG6|1|a|U|2746
9CG6|1|a|G|2747
9CG6|1|a|A|2748
9CG6|1|a|A|2749
9CG6|1|a|A|2750
9CG6|1|a|G|2751
9CG6|1|a|C|2752
9CG6|1|a|A|2753
9CG6|1|a|U|2754
9CG6|1|a|C|2755
9CG6|1|a|U|2756
9CG6|1|a|A|2757
9CG6|1|a|A|2758
9CG6|1|a|G|2759

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13