HL_9CL9_011

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CCCCGGCGAGGGG

Length

13 nucleotides

Bulged bases

9CL9|1|CA|G|489, 9CL9|1|CA|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CL9_011 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2407

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

9CL9|1|CA|C|484
9CL9|1|CA|C|485
9CL9|1|CA|C|486
9CL9|1|CA|C|487
9CL9|1|CA|G|488
9CL9|1|CA|G|489
9CL9|1|CA|C|490
9CL9|1|CA|G|491
9CL9|1|CA|A|492
9CL9|1|CA|G|493
9CL9|1|CA|G|494
9CL9|1|CA|G|495
9CL9|1|CA|G|496

Current chains

Chain CA

23S rRNA

Nearby chains

Chain S

Large ribosomal subunit protein uL22

Chain U

Large ribosomal subunit protein uL24