9CL9 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9CL9_032 | No text annotation | ||
| HL_9CL9_001 | No text annotation | ||
| HL_9CL9_002 | No text annotation | ||
| HL_9CL9_033 | No text annotation | ||
| HL_9CL9_003 | No text annotation | ||
| HL_9CL9_004 | No text annotation | ||
| HL_9CL9_034 | No text annotation | ||
| HL_9CL9_040 | No text annotation | ||
| HL_9CL9_005 | No text annotation | ||
| HL_9CL9_006 | No text annotation | ||
| HL_9CL9_035 | No text annotation | ||
| HL_9CL9_007 | No text annotation | ||
| HL_9CL9_008 | No text annotation | ||
| HL_9CL9_009 | No text annotation | ||
| HL_9CL9_036 | No text annotation | ||
| HL_9CL9_010 | No text annotation | ||
| HL_9CL9_011 | No text annotation | ||
| HL_9CL9_012 | No text annotation | ||
| HL_9CL9_013 | No text annotation | ||
| HL_9CL9_014 | No text annotation | ||
| HL_9CL9_015 | No text annotation | ||
| HL_9CL9_016 | No text annotation | ||
| HL_9CL9_017 | No text annotation | ||
| HL_9CL9_018 | No text annotation | ||
| HL_9CL9_019 | No text annotation | ||
| HL_9CL9_037 | No text annotation | ||
| HL_9CL9_020 | No text annotation | ||
| HL_9CL9_021 | No text annotation | ||
| HL_9CL9_041 | No text annotation | ||
| HL_9CL9_038 | No text annotation | ||
| HL_9CL9_022 | No text annotation | ||
| HL_9CL9_023 | No text annotation | ||
| HL_9CL9_024 | Anticodon loop related | ||
| HL_9CL9_025 | No text annotation | ||
| HL_9CL9_026 | No text annotation | ||
| HL_9CL9_039 | No text annotation | ||
| HL_9CL9_027 | No text annotation | ||
| HL_9CL9_028 | No text annotation | ||
| HL_9CL9_029 | No text annotation | ||
| HL_9CL9_030 | No text annotation | ||
| HL_9CL9_031 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9CL9_001 | Tandem non-canonical cWW pairs | ||
| IL_9CL9_002 | Isolated non-canonical cWW pair | ||
| IL_9CL9_025 | No text annotation | ||
| IL_9CL9_003 | No text annotation | ||
| IL_9CL9_004 | Isolated non-canonical cWW pair | ||
| IL_9CL9_005 | No text annotation | ||
| IL_9CL9_006 | No text annotation | ||
| IL_9CL9_007 | Isolated non-canonical cWW pair | ||
| IL_9CL9_026 | No text annotation | ||
| IL_9CL9_008 | No text annotation | ||
| IL_9CL9_009 | No text annotation | ||
| IL_9CL9_010 | Single stack bend | ||
| IL_9CL9_011 | No text annotation | ||
| IL_9CL9_029 | Kink-turn | ||
| IL_9CL9_012 | No text annotation | ||
| IL_9CL9_027 | No text annotation | ||
| IL_9CL9_013 | Major groove minor groove platform with tHH | ||
| IL_9CL9_014 | No text annotation | ||
| IL_9CL9_015 | No text annotation | ||
| IL_9CL9_016 | No text annotation | ||
| IL_9CL9_017 | Single stack bend | ||
| IL_9CL9_018 | No text annotation | ||
| IL_9CL9_019 | Isolated non-canonical cWW pair | ||
| IL_9CL9_020 | No text annotation | ||
| IL_9CL9_021 | Self complementary | ||
| IL_9CL9_022 | Single stack bend | ||
| IL_9CL9_028 | No text annotation | ||
| IL_9CL9_030 | No text annotation | ||
| IL_9CL9_023 | Isolated near basepair | ||
| IL_9CL9_024 | Single stack bend |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9CL9_002 | No text annotation | ||
| J3_9CL9_001 | No text annotation | ||
| J4_9CL9_001 | No text annotation | ||
| J5_9CL9_001 | No text annotation | ||
| J5_9CL9_002 | No text annotation |
Coloring options: