RNA 3D Hub //

9CL9 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9CL9_0011/CA/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_9CL9_0331/CA/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_9CL9_0031/CA/123:128No text annotation
HL_9CL9_0401/CA/134:145No text annotation
HL_9CL9_0051/CA/156:170No text annotation
HL_9CL9_0061/CA/194:202No text annotation
HL_9CL9_0351/CA/297:341No text annotation
HL_9CL9_0071/CA/301:316No text annotation
HL_9CL9_0081/CA/327:336No text annotation
HL_9CL9_0091/CA/381:394No text annotation
HL_9CL9_0361/CA/408:419No text annotation
HL_9CL9_0101/CA/410:418No text annotation
HL_9CL9_0111/CA/484:496No text annotation
geometric
HL_4V9F_011
HL_75660.5
HL_9CL9_0121/CA/539:554No text annotation
geometric
HL_7A0S_011
HL_75660.5
HL_9CL9_0131/CA/610:618No text annotation
geometric
HL_7VTI_001
HL_48417.5
HL_9CL9_0171/CA/977:986No text annotation
geometric
HL_4V9F_011
HL_75660.5
HL_9CL9_0191/CA/1166:1184No text annotation
HL_9CL9_0371/CA/1219:1230No text annotation
HL_9CL9_0201/CA/1220:1229No text annotation
HL_9CL9_0411/CA/1280:1290No text annotation
HL_9CL9_0381/CA/1319:1333No text annotation
HL_9CL9_0221/CA/1323:1331No text annotation
HL_9CL9_0241/CA/1629:1637Anticodon loop related
geometric
HL_4V9F_032
HL_77082.1
HL_9CL9_0261/CA/2594:2599No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_9CL9_0391/CA/2647:2673No text annotation
HL_9CL9_0271/CA/2652:2669No text annotation
HL_9CL9_0281/CA/2700:2707No text annotation
geometric
HL_3R4F_002
NA
HL_9CL9_0301/CA/2791:2805No text annotation

Problematic loops

#loop idProblemSequence
HL_9CL9_032No text annotation
HL_9CL9_002No text annotation
HL_9CL9_004No text annotation
HL_9CL9_034No text annotation
HL_9CL9_014No text annotation
HL_9CL9_015No text annotation
HL_9CL9_016No text annotation
HL_9CL9_018No text annotation
HL_9CL9_021No text annotation
HL_9CL9_023No text annotation
HL_9CL9_025No text annotation
HL_9CL9_029No text annotation
HL_9CL9_031No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9CL9_0031/CA/80:85,
1/CA/97:106		No text annotation
IL_9CL9_0051/CA/292:296,
1/CA/342:348		No text annotation
IL_9CL9_0061/CA/407:410,
1/CA/418:420		No text annotation
geometric
IL_4P3T_002
NA
IL_9CL9_0071/CA/993:996,
1/CA/1159:1161		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
IL_57744.1
IL_9CL9_0261/CA/996:1005,
1/CA/1138:1159		No text annotation
IL_9CL9_0081/CA/997:1011,
1/CA/1150:1158		No text annotation
IL_9CL9_0091/CA/1011:1016,
1/CA/1146:1150		No text annotation
geometric
IL_5TBW_121
NA
IL_9CL9_0101/CA/1199:1200,
1/CA/1245:1247		Single stack bend
geometric
IL_5J7L_044
IL_26793.1
IL_9CL9_0111/CA/1201:1207,
1/CA/1239:1244		No text annotation
IL_9CL9_0291/CA/1207:1215,
1/CA/1234:1239		Kink-turn
geometric
IL_6HCT_001
IL_64900.1
IL_9CL9_0131/CA/1319:1323,
1/CA/1331:1333		Major groove minor groove platform with tHH
geometric
IL_4WF9_050
IL_83150.2
IL_9CL9_0141/CA/1344:1351,
1/CA/1381:1403		No text annotation
IL_9CL9_0151/CA/1351:1356,
1/CA/1376:1381		No text annotation
IL_9CL9_0171/CA/1649:1651,
1/CA/2007:2008		Single stack bend
geometric
IL_5J7L_249
IL_90729.1
IL_9CL9_0181/CA/1651:1656,
1/CA/2004:2007		No text annotation
IL_9CL9_0221/CA/2650:2652,
1/CA/2669:2670		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_9CL9_0301/CA/2678:2698,
1/CA/2709:2729		No text annotation
IL_9CL9_0241/CA/2842:2844,
1/CA/2874:2875		Single stack bend
geometric
IL_7KGA_003
IL_90729.1

Problematic loops

#loop idProblemSequence
IL_9CL9_001Tandem non-canonical cWW pairs
IL_9CL9_002Isolated non-canonical cWW pair
IL_9CL9_025No text annotation
IL_9CL9_004Isolated non-canonical cWW pair
IL_9CL9_012No text annotation
IL_9CL9_027No text annotation
IL_9CL9_016No text annotation
IL_9CL9_019Isolated non-canonical cWW pair
IL_9CL9_020No text annotation
IL_9CL9_021Self complementary
IL_9CL9_028No text annotation
IL_9CL9_023Isolated near basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9CL9_0021/CA/268:295,
1/CA/343:406,
1/CA/421:424		No text annotation
J4_9CL9_0011/CA/2636:2647,
1/CA/2673:2677,
1/CA/2730:2744,
1/CA/2760:2782		No text annotation
J5_9CL9_0021/CA/817:839,
1/CA/939:952,
1/CA/965:992,
1/CA/1162:1166,
1/CA/1184:1191		No text annotation

Problematic loops

#loop idProblemSequence
J3_9CL9_001No text annotation
J5_9CL9_001No text annotation

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