HL_9CL9_013

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CCGAAUAGG

Length

9 nucleotides

Bulged bases

9CL9|1|CA|A|614, 9CL9|1|CA|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CL9_013 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.3773

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9CL9|1|CA|C|610
9CL9|1|CA|C|611
9CL9|1|CA|G|612
9CL9|1|CA|A|613
9CL9|1|CA|A|614
9CL9|1|CA|U|615
9CL9|1|CA|A|616
9CL9|1|CA|G|617
9CL9|1|CA|G|618

Current chains

Chain CA

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4