3D structure

PDB id
9CL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
WT 12C IM fraction, B-b3 with RluB bound
Experimental method
ELECTRON MICROSCOPY
Resolution
5.04 Å

Loop

Sequence
GGGCUAACGUC
Length
11 nucleotides
Bulged bases
9CL9|1|CA|U|958, 9CL9|1|CA|C|961
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9CL9_016 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.334
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

9CL9|1|CA|G|953
9CL9|1|CA|G|954
9CL9|1|CA|G|956
9CL9|1|CA|C|957
9CL9|1|CA|U|958
9CL9|1|CA|A|959
9CL9|1|CA|A|960
9CL9|1|CA|C|961
9CL9|1|CA|G|962
9CL9|1|CA|U|963
9CL9|1|CA|C|964

Current chains

Chain CA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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