HL_9CL9_016
3D structure
- PDB id
- 9CL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT 12C IM fraction, B-b3 with RluB bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.04 Å
Loop
- Sequence
- GGGCUAACGUC
- Length
- 11 nucleotides
- Bulged bases
- 9CL9|1|CA|U|958, 9CL9|1|CA|C|961
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9CL9_016 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.334
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9CL9|1|CA|G|953
9CL9|1|CA|G|954
9CL9|1|CA|G|956
9CL9|1|CA|C|957
9CL9|1|CA|U|958
9CL9|1|CA|A|959
9CL9|1|CA|A|960
9CL9|1|CA|C|961
9CL9|1|CA|G|962
9CL9|1|CA|U|963
9CL9|1|CA|C|964
Current chains
- Chain CA
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: