HL_9CL9_016

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

GGGCUAACGUC

Length

11 nucleotides

Bulged bases

9CL9|1|CA|U|958, 9CL9|1|CA|C|961

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CL9_016 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.334

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9CL9|1|CA|G|953
9CL9|1|CA|G|954
9CL9|1|CA|G|956
9CL9|1|CA|C|957
9CL9|1|CA|U|958
9CL9|1|CA|A|959
9CL9|1|CA|A|960
9CL9|1|CA|C|961
9CL9|1|CA|G|962
9CL9|1|CA|U|963
9CL9|1|CA|C|964

Current chains

Chain CA

23S rRNA

Nearby chains