HL_9CL9_017

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

GGAAACAACC

Length

10 nucleotides

Bulged bases

9CL9|1|CA|A|980, 9CL9|1|CA|A|983, 9CL9|1|CA|A|984, 9CL9|1|CA|C|985

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CL9_017 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2329

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

9CL9|1|CA|G|977
9CL9|1|CA|G|978
9CL9|1|CA|A|979
9CL9|1|CA|A|980
9CL9|1|CA|A|981
9CL9|1|CA|C|982
9CL9|1|CA|A|983
9CL9|1|CA|A|984
9CL9|1|CA|C|985
9CL9|1|CA|C|986

Current chains

Chain CA

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21