3D structure

PDB id
9CL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
WT 12C IM fraction, B-b3 with RluB bound
Experimental method
ELECTRON MICROSCOPY
Resolution
5.04 Å

Loop

Sequence
GGAAACAACC
Length
10 nucleotides
Bulged bases
9CL9|1|CA|A|980, 9CL9|1|CA|A|983, 9CL9|1|CA|A|984, 9CL9|1|CA|C|985
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9CL9_017 not in the Motif Atlas
Geometric match to HL_4V9F_011
Geometric discrepancy: 0.2329
The information below is about HL_4V9F_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

9CL9|1|CA|G|977
9CL9|1|CA|G|978
9CL9|1|CA|A|979
9CL9|1|CA|A|980
9CL9|1|CA|A|981
9CL9|1|CA|C|982
9CL9|1|CA|A|983
9CL9|1|CA|A|984
9CL9|1|CA|C|985
9CL9|1|CA|C|986

Current chains

Chain CA
23S rRNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20
Chain R
Large ribosomal subunit protein bL21

Coloring options:


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