HL_9CL9_018

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

GUUAAGUGGGAAACGAGCGGAAGAUGUAACGGGGCUAAAC

Length

40 nucleotides

Bulged bases

9CL9|1|CA|A|1126, 9CL9|1|CA|A|1129, 9CL9|1|CA|G|1131, 9CL9|1|CA|A|1133, 9CL9|1|CA|A|1143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|G|1017
9CL9|1|CA|U|1018
9CL9|1|CA|U|1019
9CL9|1|CA|A|1020
9CL9|1|CA|A|1021
9CL9|1|CA|G|1022
9CL9|1|CA|U|1023
9CL9|1|CA|G|1024
9CL9|1|CA|G|1025
9CL9|1|CA|G|1026
9CL9|1|CA|A|1027
9CL9|1|CA|A|1028
9CL9|1|CA|A|1029
9CL9|1|CA|C|1030
9CL9|1|CA|G|1031
9CL9|1|CA|A|1032
9CL9|1|CA|G|1122
9CL9|1|CA|C|1123
9CL9|1|CA|G|1124
9CL9|1|CA|G|1125
9CL9|1|CA|A|1126
9CL9|1|CA|A|1127
9CL9|1|CA|G|1128
9CL9|1|CA|A|1129
9CL9|1|CA|U|1130
9CL9|1|CA|G|1131
9CL9|1|CA|U|1132
9CL9|1|CA|A|1133
9CL9|1|CA|A|1134
9CL9|1|CA|C|1135
9CL9|1|CA|G|1136
9CL9|1|CA|G|1137
9CL9|1|CA|G|1138
9CL9|1|CA|G|1139
9CL9|1|CA|C|1140
9CL9|1|CA|U|1141
9CL9|1|CA|A|1142
9CL9|1|CA|A|1143
9CL9|1|CA|A|1144
9CL9|1|CA|C|1145

Current chains

Chain CA

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13