HL_9CL9_028

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CL9_028 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.3561

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

9CL9|1|CA|A|2700
9CL9|1|CA|U|2701
9CL9|1|CA|G|2702
9CL9|1|CA|C|2703
9CL9|1|CA|C|2704
9CL9|1|CA|A|2705
9CL9|1|CA|A|2706
9CL9|1|CA|U|2707

Current chains

Chain CA

23S rRNA

Nearby chains