HL_9CL9_035

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

GGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUAC

Length

45 nucleotides

Bulged bases

9CL9|1|CA|U|321, 9CL9|1|CA|G|329, 9CL9|1|CA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|G|297
9CL9|1|CA|G|298
9CL9|1|CA|A|299
9CL9|1|CA|A|300
9CL9|1|CA|G|301
9CL9|1|CA|C|302
9CL9|1|CA|G|303
9CL9|1|CA|U|304
9CL9|1|CA|C|305
9CL9|1|CA|U|306
9CL9|1|CA|G|307
9CL9|1|CA|G|308
9CL9|1|CA|A|309
9CL9|1|CA|A|310
9CL9|1|CA|A|311
9CL9|1|CA|G|312
9CL9|1|CA|G|313
9CL9|1|CA|C|314
9CL9|1|CA|G|315
9CL9|1|CA|C|316
9CL9|1|CA|G|317
9CL9|1|CA|C|318
9CL9|1|CA|G|319
9CL9|1|CA|A|320
9CL9|1|CA|U|321
9CL9|1|CA|A|322
9CL9|1|CA|C|323
9CL9|1|CA|A|324
9CL9|1|CA|G|325
9CL9|1|CA|G|326
9CL9|1|CA|G|327
9CL9|1|CA|U|328
9CL9|1|CA|G|329
9CL9|1|CA|A|330
9CL9|1|CA|C|331
9CL9|1|CA|A|332
9CL9|1|CA|G|333
9CL9|1|CA|C|334
9CL9|1|CA|C|335
9CL9|1|CA|C|336
9CL9|1|CA|C|337
9CL9|1|CA|G|338
9CL9|1|CA|U|339
9CL9|1|CA|A|340
9CL9|1|CA|C|341

Current chains

Chain CA

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24