HL_9CM4_001

3D structure

PDB id

9CM4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

HCV2 Fab bound to selected RNA loop

Experimental method

X-RAY DIFFRACTION

Resolution

1.82 Å

Loop

Sequence

GAUAGUAUCUCAAC

Length

14 nucleotides

Bulged bases

9CM4|1|G|U|6, 9CM4|1|G|U|9, 9CM4|1|G|C|12, 9CM4|1|G|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25137.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9CM4|1|G|G|4
9CM4|1|G|A|5
9CM4|1|G|U|6
9CM4|1|G|A|7
9CM4|1|G|G|8
9CM4|1|G|U|9
9CM4|1|G|A|10
9CM4|1|G|U|11
9CM4|1|G|C|12
9CM4|1|G|U|13
9CM4|1|G|C|14
9CM4|1|G|A|15
9CM4|1|G|A|16
9CM4|1|G|C|17

Current chains

Chain G

HCV2 RNA loop

Nearby chains

Chain A

HCV2 Fab heavy chain

Chain B

HCV2 fab light chain