Motif HL_25137.1 Version HL_25137.1 of this group appears in releases 4.6 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-7 | 1-10 | 2-9 | 3-8 | 6-8 | 7-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9CM4_001 | 9CM4 | 0.0000 | 4 | G | HCV2 RNA loop | G | 4 | A | 5 | A | 7 | G | 8 | A | 10 | U | 11 | C | 14 | A | 15 | A | 16 | C | 17 | tHW | cWW | cwW | cSW | ncWH | |
| 2 | HL_7A0S_075 | 7A0S | 0.7214 | 4 | X | LSU rRNA | A | 253 | A | 254 | A | 255 | C | 256 | G | 257 | C | 262 | G | 263 | U | 264 | U | 265 | U | 266 | ncWW | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAGUAUCUCAAC | 1 |
| AAACGCUUGCGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAGUAUCUCAA | 1 |
| AACGCUUGCGUU | 1 |
Release history
| Release | 4.6 |
|---|---|
| Date | 2026-01-28 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.72 | Avg 0.36 | Max 0.72
Coloring options: