HL_9CN3_009

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

9CN3|1|A|A|1991, 9CN3|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CN3_009 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.2611

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

9CN3|1|A|G|1988
9CN3|1|A|C|1989
9CN3|1|A|G|1990
9CN3|1|A|A|1991
9CN3|1|A|C|1992
9CN3|1|A|A|1993
9CN3|1|A|A|1994
9CN3|1|A|A|1995
9CN3|1|A|C|1996

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain d

39S ribosomal protein L45, mitochondrial